PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G028142.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family RAV
Protein Properties Length: 381aa    MW: 42864.4 Da    PI: 7.1024
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G028142.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.95.2e-08831221054
                   AP2  10 kkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                            ++g W A+I+       + +r++lg+f  ++eAa a++ a+ +l+
  HL.SW.v1.0.G028142.1  83 QQNGHWGAQIYA------NhQRIWLGTFKLEKEAAMAYDSAAIRLR 122
                           34788****999......44**********99**********9986 PP

2B393.91.1e-29199299186
                           EEEE-..-HHHHTT-EE--HHH.HTT.........---...........--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHH CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkke.........esktltledesgrsWevkliyrkksgryvltkGWkeFvka 71 
                           f+k+ltpsdv+k++rlv+pkk+a+++         +   e          +++++l d s rsW++k++y+++s+++v+t+GW++Fvk+
  HL.SW.v1.0.G028142.1 199 FQKELTPSDVGKLNRLVIPKKYATKYlpriseekpE---EkeshndgmvDDMEVVLHDNSMRSWKFKYCYWRSSQSFVFTRGWSRFVKE 284
                           99**************************99976651...1445666666999************************************* PP

                           HT--TT-EEEEEE-S CS
                    B3  72 ngLkegDfvvFkldg 86 
                           +gLk++D++ F+l++
  HL.SW.v1.0.G028142.1 285 KGLKANDTIAFYLSE 299
                           ************874 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.61E-2075133No hitNo description
SuperFamilySSF541713.53E-1376132IPR016177DNA-binding domain
SMARTSM003805.8E-1776137IPR001471AP2/ERF domain
PROSITE profilePS5103216.52976131IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-1576131IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.3E-31196301IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-28197299IPR015300DNA-binding pseudobarrel domain
CDDcd100174.07E-26198299No hitNo description
PROSITE profilePS5086313.606199316IPR003340B3 DNA binding domain
PfamPF023627.0E-27199299IPR003340B3 DNA binding domain
SMARTSM010198.5E-24199306IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MAMQGYKILL DSIYSHNEIL ARFPFPEGFD MEDDMSSIVL NGGANGIQEA ADSNGSVHSL  60
PPSKRAKTGS KSSSAKYKGT VKQQNGHWGA QIYANHQRIW LGTFKLEKEA AMAYDSAAIR  120
LRCGDSHRNF PWTKATAEEP KFQRHYSTDT LLNMIKDGSY QAKFEDFLRN ICLEHLEKEA  180
CLGLDSVNKG GVLFKQLLFQ KELTPSDVGK LNRLVIPKKY ATKYLPRISE EKPEEKESHN  240
DGMVDDMEVV LHDNSMRSWK FKYCYWRSSQ SFVFTRGWSR FVKEKGLKAN DTIAFYLSEQ  300
RLYENNARAF AMIEVVEDNS GLLIEGAAKH SCLGVNFGKG VHKQAEADKE EDGEVVVEEA  360
SNEIPKAGNS GFRLFGVQII *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A8e-2519630311111DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010110369.11e-122AP2/ERF and B3 domain-containing transcription factor
SwissprotQ9C6P51e-98RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLW9STT41e-122W9STT4_9R
STRINGVIT_11s0037g00010.t011e-119(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50003156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.14e-99RAV family protein